Anova Design
1. **State the assumptions for a valid ANOVA and how you would check their validity.**
- Assumptions:
1. Independence of observations.
2. Normality of residuals/errors.
3. Homogeneity of variances (equal variances across groups).
- Checking validity:
1. Independence is ensured by proper experimental design.
2. Use normal probability plots (Q-Q plots) or Shapiro-Wilk test to check normality of residuals.
3. Use Levene's test or Bartlett's test to check equality of variances.
2. **Give two reasons for running an experiment in blocks.**
- To reduce variability from nuisance factors by grouping similar experimental units.
- To increase the precision of the experiment by controlling for block effects.
3. **Define and explain Randomization, Blocking, and Replication**
- Randomization: Randomly assigning treatments to experimental units to avoid bias and ensure independence.
- Blocking: Grouping similar experimental units together to account for variability due to nuisance factors.
- Replication: Repeating treatment applications to estimate experimental error and increase reliability of results.
4. **Complete the ANOVA Table and answer questions:**
Given: DF_Total = 34, SS_Total = 41.9, Treatments_DF = 4, Treatments_SS = 14.2, Blocks_SS = 18.9, Error_DF =24
a. Fill blanks:
- Total DF is 34; so Error DF = Total DF - Treatments DF - Blocks DF.
- First find Blocks DF: Since total DF = Treatments DF + Blocks DF + Error DF,
$$34 = 4 + \text{Blocks DF} + 24 \Rightarrow \text{Blocks DF} = 34 - 4 - 24 = 6$$
- Now calculate SS_Error:
$$SS_{Error} = SS_{Total} - SS_{Treatments} - SS_{Blocks} = 41.9 - 14.2 - 18.9 = 8.8$$
- Calculate Mean Squares (MS):
$$MS_{Treatment} = \frac{SS_{Treatments}}{DF_{Treatments}} = \frac{14.2}{4} = 3.55$$
$$MS_{Blocks} = \frac{SS_{Blocks}}{DF_{Blocks}} = \frac{18.9}{6} = 3.15$$
$$MS_{Error} = \frac{SS_{Error}}{DF_{Error}} = \frac{8.8}{24} = 0.3667$$
- Calculate F values:
$$F_{Treatment} = \frac{MS_{Treatment}}{MS_{Error}} = \frac{3.55}{0.3667} \approx 9.68$$
$$F_{Blocks} = \frac{MS_{Blocks}}{MS_{Error}} = \frac{3.15}{0.3667} \approx 8.59$$
Final ANOVA Table:
| Source | DF | SS | MS | F |
|-------------|----|------|-------|-------|
| Treatments | 4 | 14.2 | 3.55 | 9.68 |
| Blocks | 6 | 18.9 | 3.15 | 8.59 |
| Error | 24 | 8.8 | 0.3667| |
| Total | 34 | 41.9 | | |
b. **Number of blocks in the design:**
Since Blocks DF = Number of Blocks - 1 = 6,
$$\Rightarrow \text{Number of Blocks} = 6 + 1 = 7$$
c. **Number of observations in each treatment total:**
Total observations = Total DF +1 = 34 +1 = 35 observations. There are 5 treatments (DF 4 means 5 treatments).
Assuming equal number of observations per treatment,
$$n = \frac{35}{5} = 7$$
So, 7 observations per treatment.
d. **Test for differences among treatment means at $\alpha = 0.05$.**
- Null hypothesis $H_0$: Treatments means are equal.
- Alternative hypothesis $H_a$: At least one treatment mean differs.
- Find critical $F$ value with $df_1=4$ and $df_2=24$ at $\alpha=0.05$. Approximated $F_{crit} \approx 2.78$.
- Since calculated $F_{Treatment} = 9.68 > 2.78$, reject $H_0$.
- Conclusion: There is sufficient evidence to conclude differences among treatment means.
e. **Test for differences among block means at $\alpha = 0.05$.**
- Null hypothesis $H_0$: Block means are equal.
- Alternative hypothesis $H_a$: At least one block mean differs.
- Degrees of freedom: $df_1 = 6$, $df_2 = 24$. Critical $F_{crit} \approx 2.51$.
- Since calculated $F_{Blocks} = 8.59 > 2.51$, reject $H_0$.
- Conclusion: There is sufficient evidence to conclude differences among block means.